PDB structure mining
Curated structure mining helps researchers identify viral targets, ligands, and protein-ligand contexts that deserve closer review.
In Silico Virology
In silico virology tools for structure-guided antiviral discovery
In silico virology brings together structural biology, cheminformatics, interaction analysis, and visual review to help researchers organize antiviral discovery questions before deeper modeling or experiments.
Workflow components
A practical structure-guided stack
Ligand interaction analysis
Contact-aware views help interpret which atoms contribute to binding and which regions may be less constrained.
Solvent accessibility analysis
Solvent-exposed atom mapping can support modification logic, exit-vector discussion, and figure generation.
Cheminformatics and annotation
Functional-group and ligand identity layers can make structural outputs easier to communicate across computational and medicinal teams.
PyMOL visualization
PyMOL session generation enables shareable structure review packages for teaching, collaborative analysis, and design discussions.
PROTAC and degrader triage
For suitable questions, V-LiSEMOD can help prioritize ligand contexts for more careful degrader-oriented follow-up.
Companion ecosystem
Connected tools for downstream design
Warhead Hunter
Continue structure-aware warhead and exit-vector review for viral ligands.
Open Warhead Hunter ↗E3 Ligandalyzer
Inspect recruiter-side structure context and E3 ligand design questions.
Open E3 Ligandalyzer ↗PROTAC Builder
Move from structural triage into bifunctional design assembly and concept exploration.
Open PROTAC Builder ↗