Ligand Indexer

Find a ligand, inspect mapped residues, and generate interaction charts.

This page keeps the original ligand indexing workflow intact while bringing the layout, navigation, and support tools in line with the rest of V-LiSEMOD.

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Interaction Definitions

Key	Interaction	Description
ionic	Ionic	Denotes an ionic interaction.
hbond	Hydrogen Bond	Denotes a hydrogen bond.
vdw	Van der Waals	Denotes a Van der Waals contact.
metal	Metal Complex	Denotes if the atom is part of a metal complex.
aromatic	Aromatic	Denotes an aromatic ring atom interacting with another aromatic ring atom.
hydrophobic	Hydrophobic	Denotes hydrophobic interaction.
carbonyl	Carbonyl	Denotes a carbonyl-carbon:carbonyl-carbon interaction.
polar	Polar	Less strict hydrogen bonding without angle terms.

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Find a ligand, inspect mapped residues, and generate interaction charts.

Interaction Definitions

Interaction Visualizations

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